Transcription Factor Binding Site Information

Helicobacter hepaticus - NC_004917.1
Fur [UniProtKB:Q7VHS0, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTTAATTATTGTTATAAA + [391821, 391838] 17101656 Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) - 499

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... ureA HH0406 HH0405 HH0404 HH0403 HH0402 ureB ureI ureE ureF ureG ureH nikE nikD nikB nikA HH0418 proB fmt birA parA parB atpF atpF' atpH atpA atpG atpD atpC HH0431 HH0432 HH0433 tolB HH0435 HH0436 slyD
Gene Locus tag Description
ureA HH0407 urease subunit alpha
HH0406 HH0406 hypothetical protein
HH0405 HH0405 hypothetical protein
HH0404 HH0404 hypothetical protein
HH0403 HH0403 hypothetical protein
HH0402 HH0402 hypothetical protein
ureB HH0408 urease subunit beta
ureI HH0409 urease accessory protein UreI
ureE HH0410 urease accessory protein UreE
ureF HH0411 urease accessory protein UreF
ureG HH0412 urease/hydrogenase-associated GTPase UreG
ureH HH0413 urease accessory protein UreH
nikE HH0414 nickel transport ATP-binding protein NikE
nikD HH0415 nickel transport permease component NikD
nikB HH0416 nickel transport system permease NikB
nikA HH0417 nickel transport system periplasmic component NikA
HH0418 HH0418 hypothetical protein
proB HH0419 gamma-glutamyl kinase
fmt HH0420 methionyl-tRNA formyltransferase
birA HH0421 biotin--protein ligase
parA HH0422 chromosome partitioning ATPase ParA
parB HH0423 transcriptional regulator involved in chromosome partitioning ParB
atpF HH0424 ATP synthase F0F1 subunit B'
atpF' HH0425 ATP synthase F0F1 subunit B
atpH HH0426 ATP synthase F0F1 subunit delta
atpA HH0427 ATP synthase F0F1 subunit alpha
atpG HH0428 ATP synthase F0F1 subunit gamma
atpD HH0429 ATP synthase F0F1 subunit beta
atpC HH0430 ATP synthase F0F1 subunit epsilon
HH0431 HH0431 biopolymer transport protein
HH0432 HH0432 biopolymer transport protein ExbD-like
HH0433 HH0433 hypothetical protein
tolB HH0434 translocation protein TolB
HH0435 HH0435 hypothetical protein
HH0436 HH0436 hypothetical protein
slyD HH0437 FKBP-type peptidylprolyl isomerase