Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00007890
Genome
Escherichia coli - NC_000913.2
TF
PhoP [UniProtKB:P23836, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATTTGTTTAAGGAATGATTAATT - [1864497, 1864519] 15703297 Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Machine learning prediction (ECO:0005649) - Experimental technique details PSSM site search (ECO:0005659) - 393

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... mipA yeaI yeaH yeaG gapA yeaD yeaE
Gene Locus tag Description
mipA b1782 scaffolding protein for murein synthesizing machinery
yeaI b1785 predicted diguanylate cyclase
yeaH b1784 conserved protein
yeaG b1783 protein kinase, function unknown; autokinase
gapA b1779 glyceraldehyde-3-phosphate dehydrogenase A
yeaD b1780 conserved protein
yeaE b1781 aldo-keto reductase, methylglyoxal to acetol, NADPH-dependent