Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00007680
Genome
Escherichia coli - NC_007779.1
TF
PhoP [UniProtKB:P23836, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TGTTTATGGGCGGTGTA - [703620, 703636] 12813061 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details S1 nuclease protection (ECO:0005666) - 381

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... nagA nagE nagD nagC nagB
Gene Locus tag Description
nagA Y75_p0656 N-acetylglucosamine-6-phosphate deacetylase
nagE Y75_p0658 fused N-acetyl glucosamine-specific PTS enzyme IICBA components
nagD Y75_p0654 UMP phosphatase
nagC Y75_p0655 DNA-binding transcriptional dual regulator
nagB Y75_p0657 glucosamine-6-phosphate deaminase