Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00005880
Genome
Pseudomonas aeruginosa - NC_002516.2
TF
AlgR [UniProtKB:P26275, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CCGTTTGGC + [5098168, 5098176] 18178737 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 325

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... fimU pilV pilW pilX pilY1 pilY2 pilE fimT lytB
Gene Locus tag Description
fimU PA4550 type 4 fimbrial biogenesis protein FimU
pilV PA4551 type 4 fimbrial biogenesis protein PilV
pilW PA4552 type 4 fimbrial biogenesis protein PilW
pilX PA4553 type 4 fimbrial biogenesis protein PilX
pilY1 PA4554 type 4 fimbrial biogenesis protein PilY1
pilY2 PA4555 type 4 fimbrial biogenesis protein PilY2
pilE PA4556 type 4 fimbrial biogenesis protein PilE
fimT PA4549 type 4 fimbrial biogenesis protein FimT
lytB PA4557 4-hydroxy-3-methylbut-2-enyl diphosphate reductase