Site information for: LexA in species Haemophilus influenzae; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00001930
Genome: Haemophilus influenzae - NC_000907.1
TF: LexA [UniProtKB:P44858, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CTGGATGTTCGTCCAG	- [345730, 345745]	16079351	Experimental technique details Consensus search (ECO:0005624) Consensus search - ECO:0005624 This is a weak form of in-silico search, in which the consensus sequence for the motif is compared to genomic positions and the number of mismatches (between candidate site and consensus) is used as a measure of site-quality. - Experimental technique details Northern blot (ECO:0005653) Northern blot - ECO:0005653 The northern blot is a technique used in molecular biology research to study gene expression by detection of RNA (or isolated mRNA) in a sample. Northern blotting involves the use of electrophoresis to separate RNA samples by size and detection with a hybridization probe complementary to part of or the entire target sequence. -	73

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
ruvA	HI0313	Holliday junction DNA helicase RuvA
ruvC	HI0314	Holliday junction resolvase
HI0315	HI0315	hypothetical protein
ruvB	HI0312	Holliday junction DNA helicase RuvB