Transcription Factor Binding Site Information

Salmonella enterica - NC_003197.1
PhoP [UniProtKB:P0DM78, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CGCTATTGCCGTTTTGTTTATCC - [2411623, 2411645] 20661307 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - 13

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... pmrD STM2303 STM2302 STM2300 yfbG pmrF yfbE arnT menE menC menB yfbB menD
Gene Locus tag Description
pmrD STM2304 polymyxin resistance protein B
STM2303 STM2303 hypothetical protein
STM2302 STM2302 inner membrane protein
STM2300 STM2300 hypothetical protein
yfbG STM2299 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
pmrF STM2298 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase
yfbE STM2297 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
arnT STM2301 4-amino-4-deoxy-L-arabinose transferase
menE STM2305 O-succinylbenzoic acid--CoA ligase
menC STM2306 O-succinylbenzoate synthase
menB STM2307 naphthoate synthase
yfbB STM2308 acyl-CoA thioester hydrolase YfbB
menD STM2309 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase