Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_000008a0
Genome
Vibrio cholerae - NC_002505.1
TF
RpoN [UniProtKB:Q9KP49, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CGGTTGAAAGAAACG + [2634405, 2634419] 22723378 Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) - 10

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... rumA VC2451 VC2453 VC2454 VC2455 VC2456
Gene Locus tag Description
rumA VC2452 23S rRNA 5-methyluridine methyltransferase
VC2451 VC2451 GTP pyrophosphokinase
VC2453 VC2453 hybrid sensory histidine kinase BarA
VC2454 VC2454 GGDEF family protein
VC2455 VC2455 hypothetical protein
VC2456 VC2456 hypothetical protein